Warm, tender, and bursting with fall flavors, these Apple Cinnamon Greek Yogurt Muffins are everything you want in a cozy treat. Each bite wraps you in the comforting taste of spiced apples, balanced with the rich tang of Greek yogurt for a moist and fluffy texture. Whether you’re baking for breakfast, snack time, or just to make the house smell incredible, these muffins deliver every time.

These muffins strike the perfect harmony between healthy and indulgent. The Greek yogurt brings in added protein and moisture without the need for heavy fats, while fresh apples and cinnamon bring their natural sweetness and depth. It’s an easy, one-bowl bake that’s perfect for busy mornings or a lazy weekend treat.

Why You’ll Love This Apple Cinnamon Greek Yogurt Muffins

Moist and Tender: Thanks to the Greek yogurt, the muffins stay soft and fluffy for days.
Simple Pantry Staples: No fancy ingredients here—just basic items and fresh apples.
Naturally Sweetened: You get sweetness from apples and a touch of brown sugar.
Perfect Make-Ahead Snack: Great for freezing and reheating on demand.
Balanced Flavor: A little tang from yogurt meets the warmth of cinnamon and juicy apple bits.

Preparation Phase & Tools to Use

Baking these muffins is as fuss-free as it gets, but using the right tools can elevate your results:

Mixing Bowls: At least two—one for wet ingredients and one for dry.
Whisk & Spatula: A whisk helps combine ingredients without overmixing, while a spatula is essential for folding in apple chunks gently.
Muffin Tin & Liners: A 12-cup muffin tin is perfect. Liners prevent sticking and make cleanup a breeze.
Ice Cream Scoop or Large Spoon: For evenly portioning batter into cups.
Cooling Rack: Allows muffins to cool evenly, preventing soggy bottoms.

Investing in good quality bakeware ensures even baking and longer-lasting tools. With everything prepped, the actual assembly and baking fly by in under an hour.

Ingredients for the Apple Cinnamon Greek Yogurt Muffins

All-purpose flour: Provides structure and stability to the muffins.
Baking powder & baking soda: The leavening duo gives the muffins their rise and fluffy texture.
Ground cinnamon: Adds that signature warm, cozy flavor.
Salt: Just a pinch enhances all the other flavors.
Brown sugar: Brings in a subtle molasses depth and moistness.
Egg: Binds everything together and adds richness.
Greek yogurt: The secret to ultra-moist muffins with added protein.
Vegetable oil: Keeps the texture light and tender.
Vanilla extract: Adds a sweet aroma and rounds out the flavor profile.
Fresh apples (peeled and chopped): The juicy star of the show that adds pockets of sweet fruit throughout.

How To Make the Apple Cinnamon Greek Yogurt Muffins

Step 1: Prep Your Ingredients

Preheat your oven to 375°F (190°C) and line a 12-cup muffin tin with paper liners. Peel and chop the apples into small cubes and set aside.

Step 2: Mix the Dry Ingredients

In a large bowl, whisk together the flour, baking powder, baking soda, salt, and ground cinnamon. This step ensures even distribution and helps prevent overmixing later.

Step 3: Combine the Wet Ingredients

In a separate bowl, whisk together the egg, brown sugar, Greek yogurt, oil, and vanilla extract until smooth and creamy.

Step 4: Fold Everything Together

Gently pour the wet mixture into the dry ingredients. Use a spatula to fold until just combined—don’t overmix. Fold in the chopped apples gently so they’re evenly distributed.

Step 5: Fill the Muffin Cups

Using an ice cream scoop or large spoon, divide the batter evenly among the muffin liners. Fill each about 3/4 full.

Step 6: Bake and Cool

Bake for 18–22 minutes, or until a toothpick inserted in the center comes out clean. Let muffins cool in the tin for 5 minutes, then transfer to a cooling rack to cool completely.

Serving and Storing These Muffins

These Apple Cinnamon Greek Yogurt Muffins are best served slightly warm, when the chopped apples are still soft and the muffin is at peak fluffiness. Pair them with a mug of spiced tea or a latte for a cozy breakfast or midday pick-me-up. For an extra treat, a dab of butter or a drizzle of honey on top brings out the natural apple sweetness.

To store, let muffins cool completely, then place them in an airtight container at room temperature for up to 3 days. For longer storage, freeze them individually wrapped in plastic and place in a zip-top bag—good for up to 2 months. Just reheat in the microwave or toaster oven when ready to enjoy.

Frequently Asked Questions

How do I keep the muffins from getting soggy?

Allow them to cool completely on a wire rack before storing. Moisture trapped in a container while warm can make the tops sticky.

Can I use a different type of yogurt?

Yes! While Greek yogurt provides the best texture, you can substitute with plain regular yogurt. Just reduce other liquids slightly if needed.

What are the best apples to use?

A firm, slightly tart variety like Honeycrisp or Granny Smith works great. They hold their shape and balance the sweetness well.

Can I make these muffins gluten-free?

Absolutely. Just swap the all-purpose flour for your favorite 1:1 gluten-free blend and make sure your baking powder is gluten-free too.

Do these muffins freeze well?

They sure do! Wrap them tightly and freeze for up to two months. Reheat for about 20 seconds in the microwave or warm in the oven.

Can I add nuts or raisins?

Definitely! Chopped walnuts, pecans, or golden raisins add great texture and flavor. Just fold them in with the apples.

Want More Muffin Ideas with a Twist?

If you enjoyed these Apple Cinnamon Greek Yogurt Muffins, you’ll probably love these other creative bakes too:

Easy Fluffy Blueberry Muffin Recipe for a classic fruity favorite.
Cinnamon Sugar French Toast Muffins if you’re craving warm, spiced sweetness.
One Bowl Banana Chocolate Muffins when chocolate and simplicity call.
Reese’s Peanut Butter Banana Bread for an indulgent twist on banana goodness.
Honey Butter Sweet Alabama Pecan Bread to add a nutty southern flair to your bake list.

Save This Pin For Later

📌 Save this recipe to your Pinterest muffin board so you can come back to it anytime: Follow Kitchen By Kate on Pinterest

And let me know in the comments how yours turned out! Did you stick with tart apples, or go for something sweeter? Try any add-ins like nuts or maple drizzle?

I love seeing your creations and ideas. Questions or tips are always welcome—let’s keep baking better together!